FOSBE2019 October 14 - 19, 2019. Valencia, Spain 8th IFAC Conference on Foundations of Systems Biology in Engineering
  
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Last updated on October 21, 2019. This conference program is tentative and subject to change

Technical Program for Wednesday October 16, 2019

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WeMo0OPEN Opening, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Opening Ceremony  
 
 
WeMo1P Plenary Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
A Single Biomolecular Controller Topology Achieves Robust Perfect
Adaptation for Arbitrary Intracellular Networks with Noisy Dynamics.
Mustafa Khammash, Dept. of Biosystems Science & Engineering, ETH Zurich
 
 
Chair: Picó, JesúsUniversitat Politecnica De Valencia
 
WeBrMoC Coffee, Hall Cubo Azul (Blue Cube’s Hall) Add to My Program 
Coffee Break We  
 
 
WeMo2T1 Invited Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Computational Design of Biomolecular Circuits  
 
Chair: Oyarzún, Diego A.University of Edinburgh
Co-Chair: Otero-Muras, IreneIIM-CSIC
Organizer: Oyarzún, Diego A.University of Edinburgh
Organizer: Otero-Muras, IreneIIM-CSIC
 
10:30-10:54, Paper WeMo2T1.1 Add to My Program
Biomolecular Signal Tracker with Fast Time Response (I)
De Battista, HernánUniversidad Nacional De La Plata - CONICET
Picó, JesúsUniversitat Politecnica De Valencia
Pico-Marco, EnricTechnical University of Valencia
Vignoni, AlejandroUniversitat Politècnica De Valencia
 
10:54-11:18, Paper WeMo2T1.2 Add to My Program
Efficient Learning in Metabolic Pathway Designs through Optimal Assembling (I)
Carbonell, PabloUniversity of Manchester
Fazulon, Jean-LoupUniversity of Manchester
Breitling, RainerUniversity of Manchester
 
11:18-11:42, Paper WeMo2T1.3 Add to My Program
Multiobjective Optimization of Gene Circuits for Metabolic Engineering (I)
Otero-Muras, IreneIIM-CSIC
Mannan, AhmadUniversity of Warwick
Banga, Julio R.IIM-CSIC (Spanish Council for Scientific Research)
Oyarzún, Diego A.University of Edinburgh
 
11:42-12:06, Paper WeMo2T1.4 Add to My Program
Leveraging Resource Competition for Part Characterization in Cell-Free Extracts (I)
Gyorgy, AndrasNew York University Abu Dhabi
 
12:06-12:30, Paper WeMo2T1.5 Add to My Program
Bayesian Model Selection in Synthetic Biology: Factor Levels and Observation Functions (I)
Bandiera, LuciaUniversity of Edinburgh, School of Engineering, IBioE
Gomez Cabeza, DavidUniversity of Edinburgh
Balsa-Canto, EvaCSIC
Menolascina, FilippoUniversity of Edinburgh
 
WeMo2T2 Invited Session, Salón de Actos Cubo Rojo (Red Cube’s Events Room) Add to My Program 
Computational Methods for Large-Scale Dynamic Modelling in Systems Medicine  
 
Chair: Weindl, DanielHelmholtz Zentrum München
Co-Chair: Villaverde, Alejandro F.IIM-CSIC
Organizer: Villaverde, Alejandro F.IIM-CSIC
Organizer: Hasenauer, JanUniversity of Bonn
 
10:30-10:54, Paper WeMo2T2.1 Add to My Program
Efficient Computation of Steady States in Large-Scale ODE Models of Biochemical Reaction Networks (I)
Lines, Glenn TerjeSimula Research Laboratory
Paszkowski, ŁukaszSimula Research Laboratory
Schmiester, LeonardHelmholtz Zentrum München
Weindl, DanielHelmholtz Zentrum München
Stapor, PaulHelmholtz Zentrum München
Hasenauer, JanUniversity of Bonn
 
10:54-11:18, Paper WeMo2T2.2 Add to My Program
Impact of Changing Cell-Cell Communication Network in Models of Epithelial Pattern Formation (I)
Varela, PedroInstituto Gulbenkian De Ciência
Monteiro, Pedro T.INESC-ID / IST - Universidade De Lisboa
Chaouiya, ClaudineInstituto Gulbenkian De Ciência
 
11:18-11:42, Paper WeMo2T2.3 Add to My Program
A Comparison of Methods for Quantifying Prediction Uncertainty in Systems Biology (I)
Villaverde, Alejandro F.IIM-CSIC
Raimundez-Alvarez, ElbaTechnische Universität München, Helmholtz Zentrum München
Hasenauer, JanUniversity of Bonn
Banga, Julio R.IIM-CSIC (Spanish Council for Scientific Research)
 
11:42-12:06, Paper WeMo2T2.4 Add to My Program
Literature and Data-Driven Based Inference of Signalling Interactions Using Time-Course Data (I)
Gjerga, EnioRWTH Aachen
Trairatphisan, PanuwatUniversity Hospital Heidelberg
Gabor, AttilaMTA SZTAKI
Saez-Rodriguez, JulioRWTH Aachen
 
12:06-12:30, Paper WeMo2T2.5 Add to My Program
Challenges in the Calibration of Large-Scale Ordinary Differential Equation Models (I)
Kapfer, Eva-MariaTechnische Universität München, Center for Mathematics
Stapor, PaulHelmholtz Zentrum München
Hasenauer, JanUniversity of Bonn
 
WeNLu Lunch, Hall Cubo Azul (Blue Cube’s Hall) Add to My Program 
Lunch We  
 
 
WeAf1T1 Regular Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Dynamics and Control of Biological Systems I  
 
Chair: Klamt, SteffenMax Planck Institute for Dynamics of Complex Technical Systems
Co-Chair: Fiore, DavideUniversity of Naples Federico II
 
14:00-14:24, Paper WeAf1T1.1 Add to My Program
Disturbance Response Analysis of Cell-To-Cell Communication Systems Based on Spatial Frequency Decomposition
Kotsuka, TaishiKeio University
Hori, YutakaKeio University
 
14:24-14:48, Paper WeAf1T1.2 Add to My Program
External and Multicellular Feedback Control of the Genetic Toggle-Switch for Cell Regulation and Applications in Synthetic Biology
Fiore, DavideUniversity of Naples Federico II
di Bernardo, MarioUniversity of Naples Federico II
 
14:48-15:12, Paper WeAf1T1.3 Add to My Program
Period - Control in a Coupled System of Two Genetic Oscillators for Synthetic Biology
Firippi, EleniUniversité Côte d’Azur, Inria, INRA, CNRS, Sorbonne Université,
Chaves, MadalenaINRIA
 
15:12-15:36, Paper WeAf1T1.4 Add to My Program
Validation and External Feedback Control of a Molecular-Titration Module in Escherichia Coli Using Microfluidics
di Bernardo, MarioUniversity of Naples Federico II
Shannon, Barbara MaryUniversity of Bristol
Postiglione, LorenaTIGEM
Zamora Chimal, Criseida GabrielaUniversity of Bristol
Annunziata, FabioUniversity of Bristol
Fiore, GianfrancoUniversity of Bristol
Matyjaszkiewicz, AntoniUniversity of Bristol
Grierson, ClaireUniversity of Bristol
Marucci, LuciaUniversity of Bristol
Savery, NigelUniversity of Bristol
 
15:36-16:00, Paper WeAf1T1.5 Add to My Program
Temperature-Dependent Dynamic Control of the TCA Cycle for Increased Volumetric Productivity of Itaconic Acid Production by Escherichia Coli
Harder, Björn-JohannesMax Planck Institute for Dynamics of Complex Technical Systems
Bettenbrock, KatjaMax Planck Institute for Dynamics of Complex Technical Systems
Klamt, SteffenMax Planck Institute for Dynamics of Complex Technical Systems
 
WeAf1T2 Regular Session, Salón de Actos Cubo Rojo (Red Cube’s Events Room) Add to My Program 
Dynamics and Control of Biological Systems II  
 
Chair: Shoemaker, JasonUniversity of Pittsburgh
Co-Chair: Marucci, LuciaUniversity of Bristol
 
14:00-14:24, Paper WeAf1T2.1 Add to My Program
Robust Optimal Control-Based Design of Combined Chemo and Immunotherapy Delivery Profiles
Moussa, KaoutherGIPSA-Lab
Fiacchini, MirkoGIPSA-Lab, CNRS
Alamir, MazenGipsa-Lab (CNRS-University of Grenoble)
 
14:24-14:48, Paper WeAf1T2.2 Add to My Program
Towards Automated Control of Embryonic Stem Cell Pluripotency
Khazim, MahmoudUniversity of Bristol
Postiglione, LorenaTIGEM
Pedone, ElisaUniversity of Bristol
Rocca, DanUniversity of Bristol
Zahra, CarineUniversity of Bristol
Marucci, LuciaUniversity of Bristol
 
14:48-15:12, Paper WeAf1T2.3 Add to My Program
Visual-Vestibular Compensation in Balance Recovery: A Function Transfer Model-Based Analysis
Voda, AlinaUniversity Joseph Fourier Grenoble 1
Martin, OlivierGIPSA-Lab, CNRS Univ. Grenoble-Alpes
Naves Neto, PauloGIPSA-Lab
Gascuel, Jean-DominiqueLJK - CNRS Université Grenoble-Alpes
Schmerber, SebastienGrenoble University Hospital, University Grenoble-Alpes
 
15:12-15:36, Paper WeAf1T2.4 Add to My Program
Kinetic Modeling of Coagulation and Fibrinolysis
LeCover, RachelCornell University
Orfeo, ThomasDepartment of Biochemistry, College of Medicine, the University
Brummel-Ziedins, KathleenDepartment of Biochemistry, College of Medicine, the University
Bravo, MariaDepartment of Biochemistry, College of Medicine, the University
Pusateri, AnthonyArmy Institute of Surgical Research, Joint Base San Antonio Fort
Varner, JeffCornell
 
15:36-16:00, Paper WeAf1T2.5 Add to My Program
Strain-Specific Immune Response to Influenza Virus Infection
Ackerman, EmilyUniversity of Pittsburgh
Mochan, ErickaCarlow University
Shoemaker, JasonUniversity of Pittsburgh
 
WeBrAfCP Poster Session, Hall Cubo Azul (Blue Cube’s Hall) Add to My Program 
Poster I + Coffee Th  
 
Chair: Vignoni, AlejandroUniversitat Politècnica De Valencia
Co-Chair: Boada, YadiraUniversitat Politècnica De València
 
16:00-17:00, Paper WeBrAfCP.1 Add to My Program
Identification of Heterogeneous Parameters in an Intracellular Reaction Network from Population Snapshot Measurements through Sensitivity Analysis and Neural Network
Lee, DongheonTexas A&M University
Jayaraman, ArulTexas A&M Univ
Kwon, JosephUCLA
 
16:00-17:00, Paper WeBrAfCP.2 Add to My Program
Implementation of an On-Line Monitoring Technique in Industrial Bioethanol Fermentations
Soares, MatheusGlobalYeast
Ribeiro, VanessaGlobalYeast
Richa, RodrigoGlobalYeast
Rangel, FranklinGlobalYeast
Souza, PaulaGlobalYeast
Oki, SergioGlobalYeast
do Amaral, MarceloGlobalYeast
 
16:00-17:00, Paper WeBrAfCP.3 Add to My Program
Towards a Model-Based Experimental Design of the Maturation Process of Biohybrid Heart Valves
Voß, KirstenRWTH Aachen University
Pyta, LorenzRWTH Aachen University
Gesenhues, JonasRWTH Aachen University
Mela, PetraRWTH Aachen University
Schmitz-Rode, ThomasRWTH Aachen University
Abel, DirkRWTH-Aachen University
 
16:00-17:00, Paper WeBrAfCP.4 Add to My Program
A Reduction Strategy to Simplify a Model of Sugar Metabolism for Application to a Large Panel of Genotypes
kanso, husseinINRA
Quilot-Turion, BénédicteINRA
MEMAH, Mohamed-MahmoudINRA
Bernard, OlivierINRIA
Gouze, Jean-LucINRIA
Baldazzi, ValentinaINRA
 
16:00-17:00, Paper WeBrAfCP.5 Add to My Program
A Multiscale Model of Defective Interfering Particle Replication During Influenza Virus Infection
Rüdiger, DanielMax Planck Institute for Dynamics of Complex Technical Systems
Laske, TanjaOtto-Von-Guericke-Universität
Reichl, UdoMax Planck Institute for Dynamics of Complex TechnicalSystems
 
16:00-17:00, Paper WeBrAfCP.7 Add to My Program
CISPER: Computational Identification of Switch Points (in a Metabolic Network) within an Environmental Range
Mairet, FrancisIfremer
 
16:00-17:00, Paper WeBrAfCP.8 Add to My Program
SEML: A Simplified English Modeling Language for Constructing Biological Models in Julia
Varner, JeffCornell
Zhang, ZhipingCornell University
 
16:00-17:00, Paper WeBrAfCP.9 Add to My Program
Fluorescence Calibration and Color Equivalence for Quantitative Synthetic Biology
Vignoni, AlejandroUniversitat Politècnica De Valencia
Boada, YadiraUniversitat Politècnica De València
Andreu-Vilarroig, CarlosUniversitat Politècnica De València
Alarcón, IvánUniversitat Politècnica De València
Boada Acosta, Lissette AnahíUniversidad De Las Fuerzas Armadas ESPE
Requena Gutiérrez, AdriánUniversitat Politècnica De València
Picó, JesúsUniversitat Politecnica De Valencia
 
WeAf2P Keynote Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Keynote 1. Modelling for Systems Medicine. Neda Bagheri, McCormick School
of Eng. & Applied Science, Northwestern University
 
 
Chair: Oyarzún, Diego A.University of Edinburgh

 
 

 
 

 

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