FOSBE2019 October 14 - 19, 2019. Valencia, Spain 8th IFAC Conference on Foundations of Systems Biology in Engineering
  
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Last updated on October 21, 2019. This conference program is tentative and subject to change

Technical Program for Thursday October 17, 2019

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ThMo1P Plenary Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Computational Modeling of Whole-Body Metabolism Permits Novel Insight into
Host-Microbiome Co-Metabolism. Ines Thiele, National University of
Ireland, Galway
 
 
Chair: Waldherr, SteffenKU Leuven
 
ThBrMoC Coffee, Hall Cubo Azul (Blue Cube’s Hall) Add to My Program 
Coffee Break Th  
 
 
ThMo2T1 Regular Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Design and Control of Synthetic Biological Systems and Circuits  
 
Chair: Carbonell, PabloUniversity of Manchester
Co-Chair: Gyorgy, AndrasNew York University Abu Dhabi
 
10:30-10:54, Paper ThMo2T1.1 Add to My Program
A Method for Design of Expression Tracking Controllers for Gene Regulatory Networks
Mori, YoshihiroKyoto Institute of Technology
Kuroe, YasuakiKyoto Institute of Technology
Ingalls, Brian P.Univ of Waterloo
 
10:54-11:18, Paper ThMo2T1.2 Add to My Program
Automated Design of Bio-Switches for Synthetic Biology: The Role of Molecular Noise
Carlos Xose, Sequeiros-FerreiroUniversity of Vigo
Vázquez Cendón, CarlosUniversidade Da Coruña
Banga, Julio R.IIM-CSIC (Spanish Council for Scientific Research)
Otero-Muras, IreneIIM-CSIC
 
11:18-11:42, Paper ThMo2T1.3 Add to My Program
Global Stabilization of a Genetic Positive Feedback Loop Via the Design of a Synthetic Auto-Repression
Chambon, LucieINRIA
Gouze, Jean-LucINRIA
 
11:42-12:06, Paper ThMo2T1.4 Add to My Program
Exploiting Ultrasensitivity for Biomolecular Implementation of a Control System without Error Detection
Montefusco, FrancescoUniversity of Padova
BULAI, Iulia MartinaDepartement of Information Engineering, University of Padova, Vi
 
12:06-12:30, Paper ThMo2T1.5 Add to My Program
Reference Conditioning Anti-Windup for the Biomolecular Antithetic Controller
Nóbel Santos-Navarro, FernandoUniversitat Politecnica De Valencia
De Battista, HernánUniversidad Nacional De La Plata - CONICET
Nuñez, SebastiánUniversidad Nacional De La Plata - CONICET
Picó, JesúsUniversitat Politecnica De Valencia
 
ThMo2T2 Invited Session, Salón de Actos Cubo Rojo (Red Cube’s Events Room) Add to My Program 
Bioreactor Modelling, Supervision and Control  
 
Chair: Bar, Nadav S.Norwegian Univ of Science and Technology
Co-Chair: Mairet, FrancisIfremer
Organizer: Bernard, OlivierINRIA
Organizer: Bar, Nadav S.Norwegian Univ of Science and Technology
 
10:30-10:54, Paper ThMo2T2.1 Add to My Program
About Overyielding with Mixed Cultures in Batch Processes (I)
Harmand, JéromeINRA
Rapaport, AlainINRA
NIDELET, ThibaultINRA
 
10:54-11:18, Paper ThMo2T2.2 Add to My Program
FBA-Based Simulator of Saccharomyces Cerevisiae Fed-Batch Cultures Involving an Internal Unbalanced Metabolite
Plaza, JoséUniversité Libre De Bruxelles, 3BIO-BioControl
Bogaerts, PhilippeUniversité Libre De Bruxelles
 
11:18-11:42, Paper ThMo2T2.3 Add to My Program
Targeted Conversion of Protein and Glucose Waste Streams to Volatile Fatty Acids by Metabolic Models
Regueira, AlberteUniversidade De Santiago De Compostela
Bevilacqua, RiccardoUniversidade De Santiago De Compostela
Lema, Juan ManuelUniversidade De Santiago De Compostela
Carballa, MartaUniversidade De Santiago De Compostela
Mauricio-Iglesias, MiguelUniversidade De Santiago De Compostela
 
11:42-12:06, Paper ThMo2T2.4 Add to My Program
Model-Based Analysis and Optimisation of a Continuous Corynebacterium Glutamicum Bioprocess Utilizing Lignocellulosic Waste
Sinner, PeterVienna University of Technology
Kager, JulianVienna University of Technology
Daume, SvenVienna University of Technology
Herwig, ChristophVienna University of Technology
 
12:06-12:30, Paper ThMo2T2.5 Add to My Program
Modeling Bounded Random Fluctuations in Biological Systems: Application to the Chemostat Model with Two Species (I)
Caraballo, TomasUniv. of Seville
López-de-la-Cruz, JavierUniversidad De Sevilla
Rapaport, AlainINRA
 
ThNLu Lunch, Hall Cubo Azul (Blue Cube’s Hall) Add to My Program 
Lunch Th  
 
 
ThAf1T1 Regular Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Modelling of Complex Biological Systems I  
 
Chair: Bernaerts, KristelUniversity of Leuven (KU Leuven)
Co-Chair: Balsa-Canto, EvaCSIC
 
14:00-14:24, Paper ThAf1T1.1 Add to My Program
Towards the Construction of GSMN-Based Community Model for an Oral Biofilm
De Winter, KjerstinKU Leuven
Ghesquière, JustienKU Leuven
Teughels, WimKU Leuven
Waldherr, SteffenKU Leuven
Bernaerts, KristelUniversity of Leuven (KU Leuven)
 
14:24-14:48, Paper ThAf1T1.2 Add to My Program
Characterizing and Ranking Computed Metabolic Engineering Strategies
Schneider, PhilippMax Planck Institute for Dynamics of Complex Technical Systems
Klamt, SteffenMax Planck Institute for Dynamics of Complex Technical Systems
 
14:48-15:12, Paper ThAf1T1.3 Add to My Program
Towards Metabolic Optimization of CHO Cells: In Silico Improvement of Culture Medium
Hamdi, AnisUniversity of Minho
Santos, SophiaCentre of Biological Engineering - University of Minho
Rocha, IsabelUniversity of Minho
 
15:12-15:36, Paper ThAf1T1.4 Add to My Program
Metabolic Flux Inference with Thermodynamic Constraints and 13C-MFA
Saldida, JoanaUniversity of Groningen
Muntoni, Anna PaolaLaboratoire De Physique Théorique, Ecole Normale Supérieure, Par
De Martino, DanieleInstitute Jozef Stefan
Hubmann, GeorgLaboratory of Molecular Cell Biology, Department of Biology, Ins
Bastian, NiebelCyoss GmbH
Braunstein, AlfredoPolitecnico Di Torino
Milias-Argeitis, AndreasUniversity of Groningen
Heinemann, MatthiasUniversity of Groningen
 
15:36-16:00, Paper ThAf1T1.5 Add to My Program
Predicting Dynamic Metabolic Flux Distributions in Wine Fermentation
Henriques, DavidIIM-CSIC
Minebois, RomainIATA-CSIC
Pérez-Torrado, RobertoIATA-CSIC
Querol, AmparoIATA-CSIC
Balsa-Canto, EvaCSIC
 
ThAf1T2 Regular Session, Salón de Actos Cubo Rojo (Red Cube’s Events Room) Add to My Program 
Modelling of Complex Biological Systems II  
 
Chair: di Bernardo, DiegoTIGEM
Co-Chair: Waldherr, SteffenKU Leuven
 
14:00-14:24, Paper ThAf1T2.1 Add to My Program
Dirac Mixture Distributions for the Approximation of Mixed Effects Models
Wang, DantongHelmholtz Zentrum, Muenchen
Stapor, PaulHelmholtz Zentrum München
Hasenauer, JanUniversity of Bonn
 
14:24-14:48, Paper ThAf1T2.2 Add to My Program
Individual-Based Modeling Explains Effects of TRAIL Treatment in Cancer Cells
Imig, DirkeUniversity of Stuttgart
Pollak, NadineInstitute for Systems Theory and Automatic Control, University O
Weiß, FelixInstitute for Systems Theory and Automatic Control
Morrison, MarkusInstitute of Cell Biology and Immunology, University of Stuttgar
Allgower, FrankUniversity of Stuttgart
 
14:48-15:12, Paper ThAf1T2.3 Add to My Program
TFEB Dynamical Model Reveals a Novel Feedback Loop Biological Mechanism
Napolitano, SaraUniversity of Naples Federico II
Ruolo, IacopoUniversity of Naples Federico II
Perrino, GiansimoneTelethon Institute of Genetics and Medicine
di Bernardo, DiegoTIGEM
 
15:12-15:36, Paper ThAf1T2.4 Add to My Program
Population Balance Modeling of Activated Sludge Microcolony Growth and Breakage
Totis, NiccoloKU Leuven
Christiaens, an-sofieKU Leuven
Smets, IlseKU Leuven, Department of Chemical Engineering, CREaS
Waldherr, SteffenKU Leuven
 
15:36-16:00, Paper ThAf1T2.5 Add to My Program
Simple Nonlinear Models for Glucose-Insulin Dynamics: Application to Intraperitoneal Insulin Infusion
Lopez-Zazueta, ClaudiaNTNU
Stavdahl, ØyvindNorwegian University of Science and Technology (NTNU)
Fougner, Anders LyngviNorwegian University of Science and Technology
 
ThBrAfCP Poster Session, Hall Cubo Azul (Blue Cube’s Hall) Add to My Program 
Poster II + Coffee Th  
 
Chair: Boada, YadiraUniversitat Politècnica De València
Co-Chair: Vignoni, AlejandroUniversitat Politècnica De Valencia
 
16:00-17:00, Paper ThBrAfCP.1 Add to My Program
Extended Kalman Filter for Biomass Estimation Using Combined Frequent and Infrequent Measurements with Stochastic Model
Tuveri, AndreaNorwegian University of Science and Technology
Lira Parada, Pedro AntonioNorwegian University of Science and Technology
Pérez-García, FernandoNTNU
Bar, Nadav S.Norwegian Univ of Science and Technology
 
16:00-17:00, Paper ThBrAfCP.2 Add to My Program
Evaluating the Performance of a Post-Translational Dynamic Metabolic Control System
Euler, ChristianUniversity of Toronto
Kadam, KaustubhUniversity of Toronto
Mahadevan, RadhakrishnanUniversity of Toronto
 
16:00-17:00, Paper ThBrAfCP.3 Add to My Program
Characterising Relationships between Model Parameters for Context-Aware Biocircuit Design (I)
Grozinger, LewisSchool of Computing, Newcastle University
Goni-Moreno, AngelSchool of Computing, Newcastle University
 
16:00-17:00, Paper ThBrAfCP.4 Add to My Program
The Development of a Fed-Batch Corynebacterium Glutamicum Fermentation Model (I)
Lira Parada, Pedro AntonioNorwegian University of Science and Technology
Pettersen, EvenNorwegian University of Science and Technology
Pérez-García, FernandoNTNU
Bar, Nadav S.Norwegian Univ of Science and Technology
 
16:00-17:00, Paper ThBrAfCP.5 Add to My Program
A Rule-Based Approach for Model Testing and Refinement (I)
Schade, SophiaAlacris Theranostics GmbH
Muradyan, ArturAlacris Theranostics GmbH
Kessler, ThomasAlacris Theranostics GmbH
Lange, BodoAlacris Theranostics GmbH
Wierling, ChristophAlacris Theranostics GmbH
 
16:00-17:00, Paper ThBrAfCP.6 Add to My Program
Simulation of Intracellular Calcium Release in Heart Cells
Vysma, MorrisUniversity of Newcastle
Welsh, JamesUniversity of Newcastle
Laver, DerekUniversity of Newcastle
 
16:00-17:00, Paper ThBrAfCP.7 Add to My Program
Reconstruction and Analysis of Genomic-Scale Metabolic Models of Industrial Escherichia Coli Strains
Alvarez Villanueva, PatriciaI2SysBio University of Valencia-CSIC
Corbín, PaolaI2SysBio University of Valencia-CSIC
Ruiz, MarioI2SysBio University of Valencia-CSIC
Peretó, JuliI2SysBio University of Valencia-CSIC
Tortajada, MartaADM-Biopolis
 
16:00-17:00, Paper ThBrAfCP.8 Add to My Program
A Low Cost, Open Source Turbidostat Design for In-Vivo Control Experiments in Synthetic Biology
Guarino, AgostinoUniversita' Degli Studi Di Napoli "Federico II"
Shannon, Barbara MaryUniversity of Bristol
Marucci, LuciaUniversity of Bristol
Grierson, ClaireUniversity of Bristol
Savery, NigelUniversity of Bristol
di Bernardo, MarioUniversity of Naples Federico II
 
16:00-17:00, Paper ThBrAfCP.9 Add to My Program
Model Mismatch in Multi-Objective Optimisation and Trade-Off Ordering Preservation
Reynoso-Meza, GilbertoPontificia Universidade Católica De Paraná
Vignoni, AlejandroUniversitat Politècnica De Valencia
Boada, YadiraUniversitat Politècnica De València
Picó, JesúsUniversitat Politecnica De Valencia
Pico-Marco, EnricTechnical University of Valencia
 
16:00-17:00, Paper ThBrAfCP.10 Add to My Program
A System Biology Approach Revealed the Nature and the Cause of the Different Metabolic Features of Weak and Strong Antibiotic Producers of the Streptomyces Genus
Marie-Joelle, VIROLLEInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS,
Millan-Oropeza, AaronInstitut National De La Recherche Agronomique (INRA)
Henry, CelineInstitut National De La Recherche Agronomique (INRA)
Lejeune, ClaraUniversité Paris-Saclay
David, MichelleUniversité Paris-Saclay
 
ThAf2P Keynote Session, Auditorio Cubo Azul (Blue Cube’s Auditorium) Add to My Program 
Keynote 2. Never Lost in Translation: How Systems Pharmacology Can Bridge
from Early Research to Proof-Of-Concept in Humans. Stephan Schaller,
Founder and CEO, esqLABS GmbH
 
 
Chair: Balsa-Canto, EvaCSIC
 
ThAf2Di Banquet, Nou Raco Restaurant Add to My Program 
Conference Dinner  
 

 
 

 
 

 

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